{"id":224,"date":"2014-10-27T15:29:54","date_gmt":"2014-10-27T15:29:54","guid":{"rendered":"https:\/\/virtuallearn.wpengine.com\/fits\/?p=224"},"modified":"2017-08-06T15:32:20","modified_gmt":"2017-08-06T15:32:20","slug":"fish-bioenergetics-4-0-update","status":"publish","type":"post","link":"https:\/\/units.fisheries.org\/fits\/2014\/10\/27\/fish-bioenergetics-4-0-update\/","title":{"rendered":"Fish Bioenergetics 4.0 Update"},"content":{"rendered":"
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Submitted by Steve R. Chipps<\/h3>\n

FITS members \u2013 a quick update on Fish Bioenergetics 4.0. This summer we finalized a database that contains parameter estimates for 108 bioenergetics models — \u00a0quite an increase from the 33 models in Fish Bioenergetics 3.0!\u00a0 We also completed a literature review of bioenergetics models and developed an Endnote library with links to PDFs. Ultimately, the library, PDFs, parameter estimates, etc\u2026 will be available on the FishBioen Web site.<\/p>\n

David Deslauriers, PhD student at South Dakota State University, has developed a working R-version of the model that links to bioenergetics models in the database.\u00a0 Recently, we\u2019ve developed an on-line prototype of the R program using Shiny, an R-based application that can be run from any computer that has access to the internet.\u00a0 At this point, the application is a prototype; we are currently adding sub-models for nutrient analysis, contaminants, and population modeling as well as adding links to input user data and parameter estimates. \u00a0We anticipate that the full version of the application will be ready for testing\/review by Spring 2015.\u00a0 \u00a0For anyone interested in helping with the project, we could use assistance with web page design & development, to supplement the model.<\/p>\n

You can view the prototype version\u00a0by following the link:\u00a0http:\/\/bioenergetics4.shinyapps.io\/bioenergetics4<\/a><\/p>\n

Some instructions from Dave\u2026<\/u><\/p>\n

The app opens with a default simulation (yellow perch growing for one day). This is to avoid an error message. But once the app is running, you can modify the species, and different input variables. You will need to click run at the bottom of the app. to see any of the changes you made apply.\u00a0So far, you cannot input your own temperature, prey energy density, and prey proportions. I am working to make that option available.\u00a0Some of the models for various species create an error in the app and we are working to fix these. <\/em><\/p>\n

For more information or to assist with the project, please contact David Deslauriers david.deslauriers@sdstate.edu<\/a> , Steve Chipps steven.chipps@sdstate.edu<\/a> , Jim Breck breck@umich.edu<\/a> or Chuck Madenjian chuck.madenjian@usgs.gov<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

Submitted by Steve R. Chipps FITS members \u2013 a quick update on Fish Bioenergetics 4.0. This summer we finalized a database that contains parameter estimates for 108 bioenergetics models — \u00a0quite an increase from the 33 models in Fish Bioenergetics 3.0!\u00a0 We also completed a literature review of bioenergetics models and developed an Endnote library […]<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[7,4],"tags":[],"class_list":["post-224","post","type-post","status-publish","format-standard","hentry","category-member-contributions","category-news","odd","first-child","last-child"],"wppr_data":[],"acf":[],"yoast_head":"\nFish Bioenergetics 4.0 Update - Data and Technology Section<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/units.fisheries.org\/fits\/2014\/10\/27\/fish-bioenergetics-4-0-update\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Fish Bioenergetics 4.0 Update - Data and Technology Section\" \/>\n<meta property=\"og:description\" content=\"Submitted by Steve R. Chipps FITS members \u2013 a quick update on Fish Bioenergetics 4.0. 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